PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G031300.1
Common NameB456_004G031300, LOC105790230
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 162aa    MW: 18022.9 Da    PI: 8.7175
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G031300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000184466123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C + F ++  L  H++ H
  Gorai.004G031300.1 44 FSCNYCQRKFFSSQALGGHQNAH 66
                        89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-64071No hitNo description
PROSITE profilePS5015711.0114471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MNYQPNTSLH LSLPNDQLNL DLALEPSSSS SSSNSPTTTE PRVFSCNYCQ RKFFSSQALG  60
GHQNAHKLER TLAKKSRELS SSVQIHGSSL SGLSHPQRFQ SHVATFEQHH RAGRFAGEIG  120
YGRRDINYGP REGMMGSWSS KGYRPEDVQD EFSHLDLSLR L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6185423e-38JX618542.1 Gossypium hirsutum clone NBRI_GE64060 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473171.11e-117PREDICTED: zinc finger protein 2-like
SwissprotQ392615e-34ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A0D2QR131e-117A0A0D2QR13_G
STRINGVIT_11s0052g01120.t011e-48(Vitis vinifera)
STRINGPOPTR_0006s18540.11e-48(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-34zinc finger protein 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]